RE: [PyMOL] fitting residues

[DeLano, W. <wa...@su...>]

Jason,

Try turning off "Smooth Loops" in the Cartoon menu.

or

   set cartoon_smooth_loops=3D0

Also potentially useful is

   set cartoon_flat_sheets=3D0

Cheers,
Warren

--
mailto:wa...@su...
Warren L. DeLano, Ph.D.
Informatics Manager
Sunesis Pharmaceuticals, Inc.
341 Oyster Point Blvd.
S. San Francisco, CA 94080
(650)-266-3606  FAX:(650)-266-3501



> -----Original Message-----
> From: Jason Maynes [mailto:ja...@bi...]
> Sent: Thursday, July 18, 2002 11:27 AM
> To: pym...@li...
> Subject: [PyMOL] fitting residues
>=20
>=20
> Hello:
>=20
> I was wondering if there was anyway to make the cartoon backbone match
> the real backbone to a greater extent.  Now I have residues=20
> displayed as
> sticks and a backbone displayed as loop and the loop doesn't=20
> really come
> near the residue so it looks like the residue is floating in=20
> space.  I am
> looking for a command similar to defining the secondary structure as
> "turn" in molscript which forces the cartoon through the=20
> actual backbone.
>=20
> Thanks in advance.
>=20
> Cheers,
> JTM
>=20
> *************************
> Jason Thomas Maynes
> MD/PhD Program
> Faculty of Medicine
> University of Alberta
> ja...@bi...
> *************************
>=20
>=20
>=20
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>=20