RE: [PyMOL] Installing from source on a linux box

[DeLano, W. <wa...@su...>]

Michael,

   Try checking out a new copy of the source code from the current CVS
repository -- the Makefiles have been simplified somewhat, so
compilation under Linux may go easier.  You should only need to change
the Python version in one place : )

Read "INSTALL.linux-rh7x"

Cheers,
Warren


--
mailto:wa...@su...
Warren L. DeLano, Ph.D.
Informatics Manager
Sunesis Pharmaceuticals, Inc.
341 Oyster Point Blvd.
S. San Francisco, CA 94080
(650)-266-3606  FAX:(650)-266-3501



> -----Original Message-----
> From: Michael George Lerner [mailto:ml...@um...]
> Sent: Monday, January 28, 2002 1:44 PM
> To: pym...@so...
> Subject: [PyMOL] Installing from source on a linux box
>=20
>=20
>=20
> Hi,
>=20
> I have PyMol up and running on my windows partition .. the=20
> installation
> was super easy.  Now, I want to set it up on my Linux=20
> partition.  I have
> Mandrake 8.1 installed, which means that my default python=20
> version is 2.1.
> It also means that many things (Numeric, zlib, etc..) are=20
> pre-installed
> for me.
>=20
> So, I downloaded the PyMol sources and tried to install it.  In the
> external packages bit, it looked like the only thing I need=20
> is glut.  So,
> I changed the setenv BASE line in build.com to point to the=20
> right place
> (/home/mglerner/src/pymol/ext in my case) and changed the setenv
> PYMOL_TARGETS line to say "glut-linux" and did "./build.com".  I also
> tried "./build.com glut-linux" for variety .. both seemed to work.
>=20
> Then I went up a directory into the main pymol directory.  I=20
> then moved
> Rules.linux to Rules.make and edited it.  There were many instances of
> -lpython1.5 .. I changed all of them to -lpython2.1.  It was=20
> still having
> some trouble finding libpython2.1, so I added=20
> -L/usr/lib/python2.1/config
> to the LIB_DIRS line.  After typing make, things get pretty=20
> far, but it
> doesn't get far enough.  I wasn't sure how many of the error=20
> messages to
> include, but I've tacked on the last screen or so of output=20
> at the end of
> this message.
>=20
> There were some things that made me think that various parts=20
> of this build
> process were really looking for python sources in the ext=20
> directory, so I
> placed a copy of the python 2.1 sources there just in case.  It didn't
> seem to help.
>=20
> Sorry if this is a dumb question,
>=20
> -michael
>=20
> ------ begin output from make ------
>=20
> make[2]: Entering directory `/home/mglerner/src/pymol/contrib/modules'
> rm -f *.o *~
> rm -f *.a tags TAGS config.c Makefile.pre python sedscript
> rm -f *.so *.sl so_locations
> VERSION=3D`../../ext/bin/python -c "import sys; print=20
> sys.version[:3]"`; \
> installdir=3D`../../ext/bin/python -c "import sys; print sys.prefix"`; =
\
> exec_installdir=3D`../../ext/bin/python -c "import sys; print
> sys.exec_prefix"`; \make -f ./Makefile.pre.in VPATH=3D. srcdir=3D. \
>         VERSION=3D$VERSION \
>         installdir=3D$installdir \
>         exec_installdir=3D$exec_installdir \
>         Makefile
> /bin/sh: ../../ext/bin/python: No such file or directory
> /bin/sh: ../../ext/bin/python: No such file or directory
> /bin/sh: ../../ext/bin/python: No such file or directory
> make[3]: Entering directory `/home/mglerner/src/pymol/contrib/modules'
> make[3]: *** No rule to make target=20
> `/lib/python/config/Makefile', needed
> by `sedscript'.  Stop.
> make[3]: Leaving directory `/home/mglerner/src/pymol/contrib/modules'
> make[2]: *** [boot] Error 2
> make[2]: Leaving directory `/home/mglerner/src/pymol/contrib/modules'
> make[1]: *** [make-modules] Error 2
> make[1]: Leaving directory `/home/mglerner/src/pymol/contrib'
> make: *** [.contrib] Error 2
>=20
> ------ end output from make ------
>=20
> --
> This isn't a democracy;|                        _  |Michael Lerner
>  it's a cheer-ocracy.  | ASCII ribbon campaign ( ) |   Michigan
> -Torrence,  Bring It On|  - against HTML email  X  |  Biophysics
>                        |                       / \ | mlerner@umich
>=20
>=20
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>=20