[PyMOL] Fe-S clusters

[Jason Y. <jk...@br...>]

Hi All,
	I'm looking for a way to display a "ball and Stick" representation
of an Fe-S cluser, with a cartoon for the protein back bone. I can get the
spheres for the Fe-S cluster, but can't connect them. Here's the script so
far.

#Pymol script for Adx 1AYF
load C:\Documents and Settings\jkyano\My Documents\P450 pdb\1AYF_A.pdb,
ADX
bg white
### cut below here and paste into script ###
set_view (\
    -0.057087217,    0.618627429,   -0.783607304,\
     0.026588190,    0.785550535,    0.618226647,\
     0.998013437,    0.014458310,   -0.061293427,\
    -1.276597023,    0.201005965, -106.195739746,\
   -12.916477203,  -11.231512070,   -8.815745354,\
    74.405113220,  137.986404419,    0.000000000 )
### cut above here and paste into script ###
util.ss
color slate, ADX
hide everything, ADX
show cartoon, ADX
select fes =(resid 109)
show sphere, fes
color yellow, fes
alter (name s1), vdw=.75
alter (name s2), vdw=.75
rebuild
sel elem fe
color marine, fe

Thanks for the help,



Jason