Re: [PyMOL] [EXTERNAL] Generate electrostatics by Python command

[Mooers, B. H.M. (HSC) <Bla...@ou...>]

Hi Petro,

APBS is a plugin and not directly part of PyMOL.

You can run apbs from the command line via subprocess in Python.

https://apbs.readthedocs.io/en/latest/using/index.html

Best regards,

Blaine

Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology, College of Medicine
Director of the Laboratory of Biomolecular Structure and Function
Academic Director, Biomolecular Structure Core, COBRE in Structural Biology
Full Member, Cancer Biology Program, Stephenson Cancer Center
University of Oklahoma Health Sciences Center

Mailing Address:
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Office: 405-271-8300 Lab: 405-271-8312

Websites:
Faculty page: https://basicsciences.ouhsc.edu/bmb/Faculty/bio_details/mooers-blaine-hm-phd
BSC-OKC (LBSF): https://research.ouhsc.edu/Core-Facilities/Laboratory-of-Biomolecular-Structure-and-Function
COBRE in Structural Biology: https://www.ou.edu/structuralbiology
________________________________
From: Petro <sub...@kh...>
Sent: Tuesday, May 16, 2023 2:19 PM
To: pym...@li... <pym...@li...>
Subject: [EXTERNAL] [PyMOL] Generate electrostatics by Python command

Hi.
How can I generate electrostatics using Python API?
Thanks.
Petro.