Re: [PyMOL] Solid stick between two residues?

[Florian N. <mai...@na...>]

> On 5 Sep 2022, at 16:39, Bruhn, Matthias <mat...@tw...> wrote:
> 
> Dear pymol users,
> does anybody recognize this type of bond and can explain me what this is? It appears between a Lysine and an Aspartic acid. I expect a hydrogen bond, but for some reason PyMol connects the two amino acids with a stick?

Pymol will create a bond if the distance between the hydrogen of this lysine and the aspartate is too short.
I guess that the protonation of this protein was not properly done. 

Florian