Re: [PyMOL] Object name for each object in grid display mode

[Tomas M. <tom...@gm...>]

Hi Rintarou,

Your script works beautifully! Thanks a lot.

Best wishes,
Tomas

On Wed, Jul 20, 2022 at 3:50 AM Suzuki, Rintarou <rs...@af...> wrote:
>
> Hi Tomas,
>
> You can do it with the following script
>
>
> from pymol import cmd
>
> cmd.set('grid_mode', 1)
> ids = ("1A70", "1AG6", "1B9W", "1BJA", "1BM8", "1BMG", "1BOX", "1BTE",
> "1BXU", "1BXV", "1BYO", "1BYP")
>
> for i in ids:
>   cmd.fetch(i)
>   if i != "1A70":
>     cmd.cealign("1A70", i+" & c. A")
> cmd.zoom("all", "-20")
>
> for i in ids:
>   cmd.pseudoatom(i+"_info")
>   cmd.label(i+"_info", '"{}"'.format(i))
>   cmd.set('label_size', 16, i+"_info")
>   cmd.set('label_position', '0, 7, 10', i+"_info")
>   cmd.group(i+"_group", "{0} {0}_info".format(i))
>
> cmd.hide("everything", "r. hoh")
> cmd.hide("everything", "c. B")
> cmd.hide("nonbonded")
>
>
> Regards,
> Rintaro
>
>
> On 2022/07/20 1:48, Tomas Malinauskas wrote:
> > Dear All,
> >
> > Is it possible to show the object name for each object in grid display
> > mode? E.g. I have 12 PDBs loaded in grid mode and would like to show
> > their IDs (not in the side panel but in the main window) at the same
> > time.
> >
> > I thank you for your help.
> >
> > Best wishes,
> > Tomas
> >
> >
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