[PyMOL] why does coordinates not overlap with map

[sunyeping <sun...@al...>]

Dear pymol users,

I have a coordinate file (pdb) and a map file (mtz), and I want to make a image that shows both the coordinate and the map. I generate a .map.ccp4 file using fft in CCP4 program. However, when I open the pdb file and the .map.ccp4 in pymol, I find the coordinates are out of the map. Please see the image at the following link:
       https://drive.google.com/file/d/1TmH-mFCnsCNghcq4RQJ9mNOBlTfCRsHW/view?usp=sharing
Could anyone tell me how to map them overlap?

Thank you in advance.

Best regards