From: Enrico M. <jms...@gm...> - 2022-04-29 09:14:45
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Dear Pymol Users! My Pymol batch script loads all pdb filles from the output directory split states and saves the pse session pymol "${output}"/*.pdb -c -d " from pymol import cmd #cmd.load('${output}/*.pdb') cmd.set('grid_mode','1') cmd.orient() cmd.bg_color('white') cmd.show('sticks', 'not polymer') cmd.show('spheres', 'not polymer') cmd.set('stick_radius', '0.12', 'not polymer') cmd.set('sphere_scale', '0.20', 'not polymer') cmd.save('${output_pse}/${project}.pse') " 1) As you may see I load the filles using bash syntax as *.pdb. Is it possible to do it directly in the pymol script e.g. using glob ? Could you please show me the example of such syntax? e.g. I''e already tried #cmd.load('${output}/*.pdb') but it did not recognize the pattern. 2) is it possible to print the name of each separate pdb in the splitted grid display? Many thanks in advance! Cheers Enrico |