[PyMOL] RMSD from DCD

[Mcguire, K. <klm...@UC...>]

I have been using VMD for most of my MD analysis, but I am trying to learn PyMol now.  I know how to load a pdb and a dcd onto that pdb.  But how do I measure the RMSD of each frame in the DCD aligned to the starting structure, and then output a graph like of RMSD vs frame? Doing this through scripting would be great. Thanks!