Re: [PyMOL] Set label for visible amino acids

[Enrico M. <jms...@gm...>]

Dear Vijay,
thank you very much, it works very good. Magic! :-)
Cheers,
Enrico

ср, 12 янв. 2022 г. в 13:53, Dr. Vijay Masand <vij...@gm...>:
>
> Dear Enrico
> Use the following command:
> label n. CA & all within 5 of organic, "%s%s" % (resn,resi)
> The above command will label all CA atoms within 5 angstrom from Organic molecule with residue number and name.
> I have collected a good number of commands for showing ligand-protein complexes.
>
> With Warm Regards
> Dr. Vijay H. Masand
> Department of Chemistry,
> Vidya Bharati College, Amravati, 444 602
> Maharashtra, India.
> Phone number- +91-9403312628
> https://sites.google.com/site/vijaymasand/
>
>
>
> On Wed, Jan 12, 2022 at 5:55 PM Enrico Martinez <jms...@gm...> wrote:
>>
>> exactly we may do it in the context meny for the particular selection
>> (we do not need to select a particular residues, so ..)
>> but may we create the same label using label command as well ??
>> cmd.label('sele', 'resn')
>> I think something should be used instead of 'resn'. there is also
>> option 'resi' which shows only the number of the amino acid. So I need
>> to combine "resn" and "resi"
>> :-)
>>
>> вт, 11 янв. 2022 г. в 21:27, Oganesyan, Vaheh <vah...@as...>:
>> >
>> > For label like ‘R87’ I manually do “label /s309/B/H/ARG`87/CA, ‘R87’”
>> >
>> >
>> >
>> > Vaheh
>> >
>> >
>> >
>> > From: Enrico Martinez <jms...@gm...>
>> > Sent: Tuesday, January 11, 2022 12:34 PM
>> > To: pymol-users <pym...@li...>
>> > Subject: [PyMOL] Set label for visible amino acids
>> >
>> >
>> >
>> > Dear Pymol users!
>> > Here is the chain of the pymol commands that I am using to label the
>> > visible amino-acids shown as lines in the current pymol session.
>> > cmd.select('name CA and rep lines')
>> > cmd.label('sele', 'resn')
>> > cmd.set('label_font_id', '14')
>> > cmd.set('label_color', 'indigo')
>> > cmd.set('label_position', '3,0,0')
>> > It produces nice labeling according to the amino acid name (example
>> > Tyr). How it would be possible to indicate additionally the number of
>> > the amino acid like Tyr-119 or simply using one letter code + the
>> > number?
>> > Many thanks in advance
>> > Enrico
>> >
>> >
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>>
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