[PyMOL] visualisation of ligand conformations predicted in Docking

[Enrico M. <jms...@gm...>]

Dear Pymol Users!
I am working on the visualization of the ligand binding poses
predicted by protein-ligand docking. Having 88 solutions I split these
states into different states and then set transparency=0.8 to each of
them, in order to visualize them as the "cloud" of the conformational
space of the ligand predicted in docking. I also selected the best
docking pose (always the first model) and colored it in Red without
the transparency. The problem is that, during the visualization, on
the  png graph, the best docking pose looks to be on the second plane
compared to others (transparent) poses. How could I always move this
model on the first plane compared to other aligned ligand poses?
P.S. I tried to enclose the PNG to my message but it seems that it
could not pass the moderator filter ..