Re: [PyMOL] how to create multi-model pdb for protein-ligand complex?

[Enrico M. <jms...@gm...>]

In the case of
cmd.save("together.pdb", "all", "0", "pdb")
it saves everything in one pdb when the protein is present only in the
first model, while I need to obtain its representation in all models
Cheers
E.

пт, 7 янв. 2022 г. в 13:14, Saurabh Gayali <sau...@gm...>:

> Have you tried the save command after opening both files?
> https://pymol.org/dokuwiki/doku.php?id=command:save
> Though not sure how the different poses will merge.
> Also looking for a solution for a similar problem.
>
> ------------------------------
>
> *Saurabh Gayali* / Post Doctoral Fellow
> sau...@gm... / +91 8800412916
>
> *CSIR-IGIB*
> <http://example.com/>New Delhi, India
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> 05:43:49 pm
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> On Fri, Jan 7, 2022 at 3:43 PM Enrico Martinez <jms...@gm...>
> wrote:
>
>> Dear Autodock Users!
>> I am dealing with the structural analysis of the protein-ligand
>> interactions observed in the protein-ligand docking using VINA.
>> Basically operating with the outputs I have two different pdb files:
>> 1) for docking receptor (1 protein model) as well as for 2) docking
>> sollutions (100 solutions). So I use pymol to open the both filles and
>> visualize them
>>
>> pymol sollutions.pdb receptor.pdb
>>
>> May you suggest me some pymol command to merge the both in the pymol
>> to. create multi-model PDB consisted of the both receptor and ligand
>> poses in order then I could perform some structural analysis of this
>> combined complex?
>> Many thanks in advance
>> Enrico
>>
>>
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