[PyMOL] Analysis of protein-ligand interactions

[Enrico M. <jms...@gm...>]

Dear Pymol users!
I am performing analysis of protein-ligand interactions for the ligand
pose established in protein-docking and comparing it with the pattern
observed in the X-ray structure for the same complex.
Is it possible to use some Pymol command in the pymol's command line
to save (in the text log) all of the non-bonded interactions
established between ligand and all of the surrounded groups of the
receptor for two different selections:
(1) between the conformation used for docking and the best docking pose
(2) between the X-ray structure + it's (native) ligand pose

assuming that ((1): two different objects for receptor.pdb and the
ensemble of docking conformations) and ((2): one object consisting of
ligand and receptor together) are loaded in Pymol.
Many thanks in advance!
Cheers
Enrico