[PyMOL] Superposition of native pdb to scripted pdb.

[George T. <gtz...@me...>]

Apologies if this is trivial but I’m rather new to Pymol.

I’m loading a script (x.py) that allows me to visualise correlations in the atomic movements of my protein. I have no problems with this.

My next task is to load the native pdb file (e.g y.pdb) of the same protein but in a different conformation. Once I do this, y.pdb comes out garbled. My goal is to superimpose the y to x to check if the atomic correlations correspond to the conformation of y.

Many thanks in advance for any suggestions

George