[PyMOL] how to find the distance between carbon carbon bonds of two molecules with in 5 angstrom

[chakkaravarthi s. <cha...@gm...>]

What is the PYMOL common prompt to find all the carbon -carbon bonds within
5 Angstrom distance between the enclosed receptor and ligand molecules.

I have used the following command However, It provides not only CC bonds it
also provides C-OH bonds.

dist Hydrophobic, alphaCD, carvacrol_out_ligand_01, 5

How to specify the Carbon - Carbon bond between molecules.


What is the command to calculate the number of those carbon-carbon bonds.

Looking forward your reply

Regards

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-- 
*Dr. S. Chakkaravarthi, Ph. D.,*
Assistant Professor(Biochemistry)
National Institute of Food Tech. Entrepreneurship & Management (NIFTEM)
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