Re: [PyMOL] why one atom of the structure is too big in Pymol?

[Kevin J. <kj...@st...>]

The columns of your pdb aren't properly aligned; you have extra spaces
where they shouldn't be. You can fix it in a text editor. See
https://www.wwpdb.org/documentation/file-format-content/format33/sect9.html
for more information.
hth
Kevin


--
Kevin Jude, PhD (he/him/his)
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone: (650) 723-6431

On Fri, Jun 25, 2021 at 7:45 AM Nazi Ebrahimi <naz...@gm...>
wrote:

> Hello,
> Please see the attached. Pymol shows one of the oxygens too big.
>
> Can you help me with this?
>
> Nazi
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe