[PyMOL] Problem with pymol

[Roger V. <rog...@bo...>]

Hi,
I am using Open3DQSAR and I am having trouble getting molecules to show in
pymol using an educational license. In Open3DQSAR I am able to change the
executable using the env pymol command, I then change the directory, then
import the sdf file, and pymol opens but pymol does not show the molecules.
The error points to a python script in pymol and states
Traceback (most recent call last):
File
"C:\Users\roger\Appdata\Local\Schrodinger\Pymol2\lib\site-packages\pymol\parser.py",
line 52, in stdin_reader
1 = sys.stdin.readline()
AttributeError: 'NoneType' object has no attribute 'readline'
Screenshots are attached below. Do you have a solution to fix this problem?
Thanks,
Roger
[image: image.png]
[image: image.png]
[image: image.png]