Hi Isreal,
I converted the script with 2to3 using the command in a terminal:
2to3 pucker.py -w
The modified script ran as advertised on the Wiki in
pymol 2.4.0 on both DNA and RNA fetched as cif (new default) or as pdb.
Best regards,
Blaine
Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology, College of Medicine
University of Oklahoma Health Sciences Center
From: Israel Serrano [isr...@gm...]
Sent: Friday, February 12, 2021 3:54 AM
To: pym...@li...
Subject: [EXTERNAL] [PyMOL] Pucker calculations
Hello PyMOL users,
I used to run the script https://urldefense.proofpoint.com/v2/url?u=http-3A__pucker.py&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=oqRpFfO3IQkNfDPi0Q2w2tIOxTadxDYLOGY88h3JOtI&e=
(https://urldefense.proofpoint.com/v2/url?u=https-3A__pymolwiki.org_index.php_Pucker&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=RPuMEUTeEl1SDk6fnvNjFrmWxHcAWeKBa9rst15Incs&e= ) in the old version of PyMOL.
It's a script to calculate the sugar pucker information of the nucleic
acid structures.
Unfortunately, it not working in PyMOL 2.4.1, I guess because is written
in Python 2. I have tried to run the 2to3 to update the script, but I
get some errors. Has anybody been able to run this script in PyMOL 2.4?
Thanks,
Israel
_______________________________________________
PyMOL-users mailing list
Archives: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=bEEZ8HchRHWc5px7QgZDeQRKlFlLUc75ef35yQFKMAk&e=
Unsubscribe: https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_pymol_lists_pymol-2Dusers_unsubscribe&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=1LM3hOHxeB1hRxLzk3OUAC5Ax20R2nAuyURJBWgbhLo&e=
|
