Re: [PyMOL] How to iterate commands in pymol

[Robert C. <rob...@qu...>]

Hi Zuben,

You need to import the colorbyrmsd.py script within your script, then you can call it that way.  For example your script could say:

import colorbyrmsd as cbr

for obj in seleobjs:
  cmd.enable(obj)
  cbr.colorbyrmsd(obj,target)

Cheers,
Rob

On Sat, 2020-10-31 20:36  +0000,  "Brown, Zuben" <zb...@cu...> wrote:

> Hi,
> 
> I'd like to iterate using a script in pymol but one of the commands
> I'd like to use does not have an associated cmd.API. For example, how
> do I run:
> 
> for obj in seleobjs:
> cmd.enable(obj)
> colorbyrmsd(obj, target)   <--- This third line doesn't work since
> colorbyrmsd does not have a cmd.colorbyrmsd.
> 
> Is there a way I can run something like:
> cmd.executecommand("colorbyrmsd {0}, target".format(obj))  ?
> 
> Best regards,
> 
> Zuben



-- 
Robert L. Campbell, Ph.D.
Academic Advisor, BHSc Program
Assistant Professor, Dept. of Biomedical & Molecular Sciences, 
Queen's University, Kingston, ON K7L 3N6  Canada
Botterell Hall Rm 644     Tel: 613-533-6821
<rob...@qu...>  http://pldserver1.biochem.queensu.ca/~rlc