Re: [PyMOL] Help! figure (ligand in cavity)

[Vertika G. <var...@gm...>]

Thank you!

On Mon, Jun 22, 2020, 10:20 AM Joel Tyndall <joe...@ot...>
wrote:

> Dear Vertika,
>
>
>
> There are probably a few tutorials around to help you with this, but
> briefly you will probably need to extract the ligand to a new object,
> create surface of your protein and that will do it. Colour the objects, as
> you prefer
>
>
>
> Hope this helps
>
>
>
> J
>
>
>
> *From:* Vertika Gautam <var...@gm...>
> *Sent:* Monday, 22 June 2020 2:55 AM
> *To:* pym...@li...
> *Subject:* [PyMOL] Help! figure (ligand in cavity)
>
>
>
> Hello everyone
>
>
>
> I am trying to make a figure showing the potential surface and binding
> pocket as shown in the attached figure. Can anyone help me with the
> commands?
>
> Thanks in advance for your help!
>
> [image: image.png]
>
>
>
> --
>
> Vertika Gautam
>
> Research Assistant
>
> Drug Design and Development Research Group (DDDRG)
>
> Department of Chemistry, Faculty of Science
>
> University of Malaya
>
>
>
> *e-mail address: var...@gm... <var...@gm...>
>                           var...@ho...
> <var...@ho...>                           01112294191 *
>
>