Re: [PyMOL] Help! figure (ligand in cavity)

[Joel T. <joe...@ot...>]

Dear Vertika,

There are probably a few tutorials around to help you with this, but briefly you will probably need to extract the ligand to a new object, create surface of your protein and that will do it. Colour the objects, as you prefer

Hope this helps

J

From: Vertika Gautam <var...@gm...>
Sent: Monday, 22 June 2020 2:55 AM
To: pym...@li...
Subject: [PyMOL] Help! figure (ligand in cavity)

Hello everyone

I am trying to make a figure showing the potential surface and binding pocket as shown in the attached figure. Can anyone help me with the commands?
Thanks in advance for your help!
[image.png]


--
Vertika Gautam

Research Assistant
Drug Design and Development Research Group (DDDRG)
Department of Chemistry, Faculty of Science
University of Malaya
e-mail address: var...@gm...<mailto:var...@gm...>
                          var...@ho...<mailto:var...@ho...>
                          01112294191