From: Dr. V. M. <vij...@gm...> - 2020-06-21 07:53:44
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Dear All I am trying to get a nice 2D- like representation for a small molecule using PyMOL. I am using PyMOL 2.4 (Windows 10, Python3). I tried to set valence and valence_mode to get 'bonds inside' using the following commands: set valence, 1 set valence_mode, 1 Unfortunately, I am getting 'delocalized bonds' for a small molecule. Please see the attached figure. How to activate valence_mode? [image: Pymol-Issue-Valence-Mode.jpg] With Warm Regards *Dr. Vijay H. Masand* Department of Chemistry, Vidya Bharati College, Amravati, 444 602 Maharashtra, India. Phone number- +91-9403312628 https://sites.google.com/site/vijaymasand/ |