[PyMOL] Automatic Video generation

[Mohamed A. <m.b...@gm...>]

Hello everybody,

I am doing molecular simulation using GROMACS program and I visualize the
output (.pdb) using Pymol. I am inserting 4000 molecule inside a box, one
molecule at a time,  and after every insertion I convert the output into a
.pdb file so at the end I have 4000 .pdb file. I want to generate a video
to see where each new atom is inserted. This means that I need to open
(load) the 4000 file and then display them in a sequence so that each new
molecule will be clear where it was inserted. can you please guide me how
to do that ?

I am using Ubuntu system and I always open pymol using the interface (not
the terminal). I have searched online how can I do that, but I didn't find
how to do it.

Can you please help me.

Many thanks,
Mohamed