Hi Mungo,
See https://pymol.org/dokuwiki/doku.php?id=properties.
This command will print the dictionary of properties for all of the atoms:
iterate /4zho//A/*/*, print(properties.all)
Note the Python3 print() function.
The documentation needs to be updated.
Best regards,
Blaine
Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology
College of Medicine
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center (BRC) Rm. 466
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
________________________________________
From: Mungo Carstairs (Staff) [g.m...@du...]
Sent: Tuesday, May 19, 2020 2:59 AM
To: pym...@li...
Subject: [EXTERNAL] [PyMOL] How to inspect contents of 's' and 'p' for an atom?
A PyMOL novice question here.
I can write custom atom properties to its 'p' dictionary, and print them:
PyMOL>fetch 4zho
PyMOL>iterate 4zho//A/26/CA, p.metal_binding='Fe'
PyMOL>iterate 4zho//A/26/CA, print(p.metal_binding)
Fe
but how do I list the contents of the dictionary if I don't know what is in it?
PyMOL>iterate 4zho//A/26/CA, print(p)
<wrapper.PropertyWrapper object at 0x1140dcdb0>
Same question for 's':
PyMOL>iterate 4zho//A/26/CA, print(s)
<wrapper.SettingWrapper object at 0x1140dcdb0>
Better still, where would I find documentation for this?
Thanks,
Mungo
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