Re: [PyMOL] Extract all phi and psi angles

[Neena S. E. <nee...@gm...>]

Thank you Tamas, for suggesting that great MDanalysis tool, will try it
out!

Thank you Rob, yes that command worked (phi_psi obj), it gave a list of all
backbone dihedral angles!

On Sat, 9 May 2020 at 12:45, Tamas Hegedus <bio...@gm...> wrote:

> Hi,
>
> For this type of analysis I would use MDAnalysis (Python):
> https://www.mdanalysis.org/
>
> https://www.mdanalysis.org/mdanalysis/documentation_pages/analysis/dihedrals.html
>
> Tamas
>
> On 5/9/20 5:08 PM, Neena Susan Eappen wrote:
>
> Hi Jarrett,
>
> Thank you for your reply. However, that command gives phi and psi angles
> for only one atom (when only one atom is selected). Is there one command we
> can use to extract all phi and psi angles?
>
> Thanks,
> Neena
>
>
>
> On Mon, 27 Apr 2020 at 22:01, Jarrett Johnson <
> jar...@sc...> wrote:
>
>> Hi Neena,
>>
>> Is this command sufficient?
>>
>> https://pymol.org/dokuwiki/doku.php?id=command:phi_psi
>>
>> Best,
>> Jarrett J
>>
>> On Mon, Apr 27, 2020 at 9:45 PM Neena Susan Eappen <
>> nee...@gm...> wrote:
>>
>>> Hello PyMOL users,
>>>
>>> How to extract all peptide dihedral angles (phi and psi) in PyMOL?
>>>
>>> Many thanks,
>>> Neena
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>>
>>
>> --
>>
>> *Jarrett Johnson* | Senior Developer
>> [image: Schrodinger Logo] <https://www.schrodinger.com/>
>>
>
>
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