Re: [PyMOL] Extract all phi and psi angles

[Tamas H. <bio...@gm...>]

Hi,

For this type of analysis I would use MDAnalysis (Python):
https://www.mdanalysis.org/
https://www.mdanalysis.org/mdanalysis/documentation_pages/analysis/dihedrals.html

Tamas

On 5/9/20 5:08 PM, Neena Susan Eappen wrote:
> Hi Jarrett,
>
> Thank you for your reply. However, that command gives phi and psi 
> angles for only one atom (when only one atom is selected). Is there 
> one command we can use to extract all phi and psi angles?
>
> Thanks,
> Neena
>
>
>
> On Mon, 27 Apr 2020 at 22:01, Jarrett Johnson 
> <jar...@sc... 
> <mailto:jar...@sc...>> wrote:
>
>     Hi Neena,
>
>     Is this command sufficient?
>
>     https://pymol.org/dokuwiki/doku.php?id=command:phi_psi
>
>     Best,
>     Jarrett J
>
>     On Mon, Apr 27, 2020 at 9:45 PM Neena Susan Eappen
>     <nee...@gm... <mailto:nee...@gm...>> wrote:
>
>         Hello PyMOL users,
>
>         How to extract all peptide dihedral angles (phi and psi) in PyMOL?
>
>         Many thanks,
>         Neena
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>
>     -- 
>
>     *Jarrett Johnson* | Senior Developer
>
>     Schrodinger Logo <https://www.schrodinger.com/>
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