Re: [PyMOL] Wait for processing to complete before invoking new commands

[Tamas H. <bio...@gm...>]

Something is fishy... as I do not expect this to happen. I have never 
experienced this problem.
I made different types of mistakes resulting in such a phenomenon.
* using a for loop and in the command, loading the ligand, I did not 
inserted the loop variable into the file name
(e.g. I used lig_1.pdb instead of "lig_%i.pdb" % ix)
* it was not with vina (difficult to imagine this situation), but once I 
generated a set of pdb files with the same coordinates

On the other hand:
https://pymolwiki.org/index.php/Sync



On 4/30/20 5:09 AM, lei...@sb... wrote:
>
> I am writing png images for many docked ligands but all the png files 
> have the same image – even though the file names are different for the 
> ligand_out.pdbqt files.   So PyMol is getting ahead of itself and 
> quickly looping through all the code and dumping the same image but 
> with different files names since the image buffer never caught up.   
> Thus, I will need to programatically wait for each png to be 
> generated, and once the png command is finished, I can move to the 
> next ligand.
>
> What command can be used to instruct PyMol to finish its processing 
> before taking on new commands, either that or e.g. 5 sec pause? I will 
> need to use this command right after the png command.
>
>
>
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