Re: [PyMOL] Holes in dots

[Jared S. <jar...@co...>]

Hi Jason - 

This happens when there is an overlap with another atom's dots, for example where there is an H-bond or vdW contact.  One workaround would be to extract that residue you're showing in dots into a new object, so it doesn't have anything else in the object to interfere with it.

Hope that helps.

Cheers,
Jared



From: Jason Mosier <par...@gm...>
Reply: Jason Mosier <par...@gm...>
Date: April 8, 2020 at 3:07:37 PM
To: pym...@li... <pym...@li...>
Subject:  [PyMOL] Holes in dots  

Hi, I've been trying to figure out how to fix this and I just can't figure it out. I'm trying to make a nice render with dots and everything looks fine except for that the nitrogens and oxygens have these holes in them (see image: https://i.imgur.com/5G644br.png)
I know I could probably make an isomesh and all that, but if there's an easier way to fix this I'd rather do that.

Best,
Jason M.
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