Re: [PyMOL] [EXTERNAL] broken DNA cartoon

[h. a. s. <h.a...@gm...>]

Thank you Blaine!

Now I know why, and how to manually fix this.

> On Mar 20, 2020, at 10:52 PM, Mooers, Blaine H.M. (HSC) <Bla...@ou...> wrote:
> 
> The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms.
> This is outside the bond length range that PyMOL accepts so the bond is absent when you display the model as line or stick model.
> This is why the cartoon is missing or broken.
> 5FUR is a 8.5 Angstrom cryo EM structure.
> Perhaps the associated paper explains this discrepancy. 
> 
> Best regards,
> 
> Blaine
> 
> Blaine Mooers, Ph.D.
> Associate Professor
> Department of Biochemistry and Molecular Biology
> College of Medicine
> University of Oklahoma Health Sciences Center
> S.L. Young Biomedical Research Center (BRC) Rm. 466
> 975 NE 10th Street, BRC 466
> Oklahoma City, OK 73104-5419
> 
> ________________________________________
> From: h. adam steinberg [h.a...@gm...]
> Sent: Friday, March 20, 2020 8:57 PM
> To: pymol-users
> Subject: [EXTERNAL] [PyMOL] broken DNA cartoon
> 
> Hi All,
> 
> When I open 5FUR either from my drive or via fetch, the DNA cartoon is broken and mostly missing (it should span from left to right). Any ideas on how to get the cartoon to work?
> 
> Pymol version 2.3.4
> 
>