Re: [PyMOL] HELIX and SHEET records not read by Pymol

[Thomas H. <tho...@sc...>]

Hi Chris,

Works for me. Do you have an example file that doesn't work for you?

"Works for me" steps to reproduce:
- remove everything but ATOM records from 1ubq.pdb (raw.pdb)
- run stride on raw.pdb
- paste stride output on website
- paste website result into PDB file (stride.pdb)
- load stride.pdb and raw.pdb with PyMOL
-> Result: Cartoons differ

Cheers,
  Thomas

> On Aug 20, 2019, at 11:05 AM, Chris Fage <fa...@GM...> wrote:
> 
> Dear All,
> 
> Pymol seems to ignore the HELIX and SHEET records in my coordinate file, and instead assigns secondary structural features according to the default method. Unless my understanding is flawed, these records should override Pymol's assignment...?
> 
> I generated the records with the Stride Web Interface and converted them to PDB format with Emma Rath's website (http://www.canoz.com/sdh/STRIDEtoPDBsecondarystruct.pl). 
> 
> Does anyone have any ideas? Thanks!
> 
> Best wishes,
> Chris
> 
> 	Virus-free. www.avg.com
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.