[PyMOL] amino acids displayed for mutagenesis. Hyp? PTMs? (Bruce Onisko)

[ahoneg <ann...@uz...>]

Dear Bruce

Try the SwissSidechain PyMOL plugin and database

https://www.swisssidechain.ch/visualization/pymol.php

Annemarie
____________________________________________________________

Dr. Annemarie Honegger
Dept. of Biochemistry
Zürich University
Winterthurerstrasse 190
8057 Zürich
Switzerland

e-mail:   hon...@bi...
phone:   +41 44 635 55 62
fax:        +41 44 635 57 12     



> On 22 Jul 2019, at 14:02, pym...@li... wrote:
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>   1. amino acids displayed for mutagenesis. Hyp? PTMs? (Bruce Onisko)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Sun, 21 Jul 2019 22:02:08 -0700
> From: Bruce Onisko <bco...@gm...>
> To: pym...@li...
> Subject: [PyMOL] amino acids displayed for mutagenesis. Hyp? PTMs?
> Message-ID:
> 	<CANFKuAo=JQw...@ma...>
> Content-Type: text/plain; charset="utf-8"
> 
> Hi all,
> 
> I need to 'mutate" a residue of a protein to a hydroxyproline, aka HYP.
> 
> In Wizard|Mutagenesis, I see how to choose 1 of about 20 other amino acids,
> but I hydroxyproline is not in the list.
> 
> Does anyone know how I create such an entry?
> 
> Or should I learn how to edit a proline?  (Using Builder I assume?)
> 
> Anyone creating post-translational modifications (eg SER-O-phosphate) would
> have a similar question........
> 
> Thanks!
> 
> Bruce
> 
> PS \PyMOL\share\pymol\data\chempy\fragments\ has all the amino acids, but
> not what i need.
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