Re: [PyMOL] set transparency for selected elements of secondary structure

[Ali K. <aku...@un...>]

Hi James,

I am not sure what the exact cause of your issue is but I think if you make a selection first then apply the transparency to the selection that should work, i.e.:

sele ss H+S
set cartoon_transparency, 0.5, sele

Something to do with selection based transparency settings not enabling newer ones to be made

Cheers,

Ali

On 26/6/19, 6:18 pm, "James Starlight" <jms...@gm...> wrote:

    Dear pymol users!
    
    I am trying to set transparency based on the secondary structure using
    pymol selection algebra
    
    # set transparency to all helix and sheets but not loops
    set cartoon_transparency, 0.5, ss H+S
    
    which produce the following output
    PyMOL>set cartoon_transparency, 0.5, ss H+S
     Setting: cartoon_transparency set for 144 atoms in object "0190_before_minim".
    
    but actually do nothing in terms of visualization.
    
    Could you suggest me how it would be possible to fix it?
    
    Thanks in advance!
    
    
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