Re: [PyMOL] Amber .nc

[Mateusz B. <bie...@gm...>]

Can you share what error/message you get when you try to load the
trajectory with the command?

The snippet of code I shared works for me. According to this page it should
just work: https://pymolwiki.org/index.php/Load_Traj

Do you happen to use a truncated octahedron?

Best, Mat

On Mon, Jul 23, 2018 at 2:27 PM Stejskal, Lenka <len...@uc...>
wrote:

> Hi Mat,
>
>
> I have of course read that but I am still unable to load the trajectory. I
> was looking for an actual successful example not just a guide.
>
>
> Thanks
>
>
> Lenka
> ------------------------------
> *From:* Mateusz Bieniek <bie...@gm...>
> *Sent:* 23 July 2018 14:04:22
> *To:* Stejskal, Lenka
> *Cc:* pym...@li...
> *Subject:* Re: [PyMOL] Amber .nc
>
> Hi Lenka,
>
> Let me first state that the command "help load_traj" points to the webpage
> which in turns says that the .nc format is supported by pymol.
>
> I come from the gromacs background. Once you load the topology/state of
> your system (in my case .gro or .pdb), then use "load_traj", ie
> *load_traj trajectory.nc <http://trajectory.nc> *
>
> There are other options for this command (start, end, shift, etc).
>
> Hope this helps, Mat
>
> On Mon, Jul 23, 2018 at 11:42 AM Stejskal, Lenka <
> len...@uc...> wrote:
>
> Dear Pymol users,
>
>
> Can somebody advise how I can open amber trajectory file in .nc format?
>
>
> Thank you
>
>
> Lenka
>
> ------------------------------------------------------------------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>
>