Re: [PyMOL] how to convert .pse to html?

[Thomas H. <tho...@sc...>]

Hi Albert,

For batch processing (no GUI), run PyMOL with -c. See also https://pymolwiki.org/index.php/Command_Line_Options

I fixed the script, it was written for an old PyMOL version.

Cheers,
  Thomas

On 25 Jan 2017, at 17:01, Albert <mai...@gm...> wrote:

> BTW, I try to run the example command line, but it always failed with messages:
> 
> 
> PyMOL>pymol2glmol 1tqn
> Traceback (most recent call last):
>  File "/usr/lib64/python2.7/site-packages/pymol/parser.py", line 256, in parse
>    self.result=apply(layer.kw[0],layer.args,layer.kw_args)
>  File "/home/albert/install/pymol/Pymol-script-repo/pymol2glmol.py", line 152, in dump_rep
>    int(255 * float(bgcolor[1])), int(255 * float(bgcolor[2])))
> IndexError: tuple index out of range
> 
> 
> Do you have any idea what's the problem?
> 
> THX again.
> 
> 
> On 01/25/2017 10:46 PM, Thomas Holder wrote:
>> Hi Albert,
>> 
>> What kind of HTML content do you expect? A page with a PNG image? Or an interactive 3D model? Check out this:https://pymolwiki.org/index.php/Pymol2glmol
>> 
>> Cheers,
>>   Thomas

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.