[PyMOL] PDB Format not correct for use in CHARMM

[Marko S. <Mar...@ki...>]

Hello everybody,

I'm working with a protein-protein complex and am fixing some stuff.

When I save the fixed complex as a pdb the PDB format is not the same as it was in the imported pdb files (there it was the same as the CHARMM default pdb format).

In the saved pdb it changed the line position of atoms in the pdb file. Residues are ok but atoms in a given residue are mixed up. It also added addition TER's which I had to manually delete.

So how would I specify the output PDB format to be the same as in the original imported pdbs (before manipulation), so same as CHARMM pdb format.

Please help,

Marko