Re: [PyMOL] morph issues

[Honegger A. <hon...@bi...>]

Hi Adam

This additional letter means that you have an alternative conformation for the atom, therefore you do not have a 1:1 correspondence between the 
atoms in the two endpoints of the morph. If you eliminate the alternative conformations  (remove (not alt “”+A)) or restrict the selection to those atoms, the morph should work.

best regards

		Annemarie
_______________________________

Dr. Annemarie Honegger PhD
Department 
of Biochemistry
Zürich University
Winterthurerstrasse 190
CH-8057 Zürich
Switzerland

e-Mail: hon...@bi...

websites
http://www.bioc.uzh.ch/plueckthun
http://www.bioc.uzh.ch/plueckthun/antibody
http://www.bioc.uzh.ch/plueckthun/nanowelt





> 
> 
> Message: 6
> Date: Mon, 25 Apr 2016 20:54:01 -0500
> From: harold steinberg <h.a...@gm...>
> Subject: [PyMOL] morph issues
> To: pymol-users <pym...@li...>
> Message-ID: <0E8...@gm...>
> Content-Type: text/plain; charset="utf-8"
> 
> Hi all,
> 
> I need to generate a morph from 3J5R to 3J5Q. When I load both files and generate the morph, it?s all messed up. When I generate a morph of other structures it works just fine.
> 
> In the structures that do not morph correctly a sample selection is:
> /3j5r/A/B/ILE`573/CD1
> /3j5q/C/E/ILE`573/CD1
> 
> Notice that these files have an extra letter (?A? and ?C? before the chain identifier).
> 
> In files that the morph does work this letter is missing (it?s a blank space):
> /3lut//D/GLY`338/CA
> 
> Is that what is messing up the morph?
> 
> 
> H. Adam Steinberg
> 7904 Bowman Rd
> Lodi, WI 53555
> 608/592-2366
> 
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