Re: [PyMOL] Alignment of two proteins

[Mohsen C. <moh...@fl...>]

Hi Julian,

I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A of 4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or part of a protein, in my case chain A of 4mt1, to a specific chain or part of another protein, in my case chain B of 3aob?

Cheers
Mohsen

From: Mohsen Chitsaz
Sent: Wednesday, 24 February 2016 11:17 PM
To: 'Julian Heinrich' <ju...@jo...>
Cc: pym...@li...
Subject: RE: [PyMOL] Appending a pdb file

Hi Julian,

Many Thanks for your help. It worked.

Cheers
Mohsen

From: jul...@gm...<mailto:jul...@gm...> [mailto:jul...@gm...] On Behalf Of Julian Heinrich
Sent: Monday, 22 February 2016 8:24 PM
To: Mohsen Chitsaz <moh...@fl...<mailto:moh...@fl...>>
Cc: pym...@li...<mailto:pym...@li...>
Subject: Re: [PyMOL] Appending a pdb file

Hi Mohsen,

if you want to superimpose structures, have a look at the align command:
http://pymolwiki.org/index.php/Align

Cheers,
Julian

On Thu, Feb 18, 2016 at 10:47 PM, Mohsen Chitsaz <moh...@fl...<mailto:moh...@fl...>> wrote:
Hi

In order to superimpose two protein sequences, I am trying to append a pdb file to an existing protein sequence, which I have already opened in PyMol. The append function is not working in my PyMol. Could someone help me with this please.

Cheers
Mohsen

------------------------------------------------------------------------------
Site24x7 APM Insight: Get Deep Visibility into Application Performance
APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month
Monitor end-to-end web transactions and take corrective actions now
Troubleshoot faster and improve end-user experience. Signup Now!
http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140
_______________________________________________
PyMOL-users mailing list (PyM...@li...<mailto:PyM...@li...>)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pym...@li...