Re: [PyMOL] ColorByRMSD script

[Guilherme S. <gso...@gm...>]

I've searched about this kind of error, and in every site I look, it seems
that it is caused by using Python <= 2.5, which is not my case. Is there
any chance that my PyMOL is using and older version of Python?

2016-01-29 11:46 GMT-02:00 Guilherme Souza <gso...@gm...>:

> Okay. I did it, and kind of got the same error:
>
> PyMOL>run colorbyrmsd.py
> Traceback (most recent call last):
>   File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line
> 338, in parse
>     parsing.run_file(path,self.pymol_names,self.pymol_names)
>   File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", line
> 455, in run_file
>     execfile(file,global_ns,local_ns)
> SyntaxError: future feature print_function is not defined (colorbyrmsd.py,
> line 10)
>
> 2016-01-29 11:41 GMT-02:00 Matthew Baumgartner <mp...@pi...>:
>
>> Hi,
>> You run the command 'run colorbyrmsd.py' in the Pymol command line. That
>> initializes the function in pymol. If everything goes well, you shouldn't
>> see anything (no errors). Then to use the command, type just 'colorbyrmsd
>> [args...]' into the command line.
>>
>> You can see the usage instructions in the wiki.
>>
>> HTH,
>>
>> Matt Baumgartner
>>
>>
>> On 01/29/2016 08:36 AM, Guilherme Souza wrote:
>>
>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>> And should I expect to see my both protein structures colored in the
>> PyMOL interface?
>>
>> Thank you!
>>
>> 2016-01-29 11:36 GMT-02:00 Guilherme Souza <gso...@gm...>:
>>
>>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>>> And should I expect to see my both protein structures colored in the
>>> PyMOL interface?
>>>
>>> 2016-01-29 11:35 GMT-02:00 Guilherme Souza < <gso...@gm...>
>>> gso...@gm...>:
>>>
>>>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>>>> And should I expect to see my both protein structures colored in the
>>>> PyMOL interface?
>>>>
>>>> Thank you!
>>>>
>>>> 2016-01-29 11:09 GMT-02:00 Schubert, Carsten [JRDUS] <
>>>> CSC...@it...>:
>>>>
>>>>> Hi Guilherme,
>>>>>
>>>>>
>>>>>
>>>>> the script is not a plugin, so you cannot install it since it is
>>>>> missing some software infrastructure to work as a plugin. Simply put the
>>>>> script into the directory you are working in and run it via ‘run
>>>>> colorbyrmsd.py’ . This will add the command to the scripting interface and
>>>>> you can run the command like any other pymol command. See the wiki for the
>>>>> details in that regards.
>>>>>
>>>>>
>>>>>
>>>>> HTH
>>>>>
>>>>>
>>>>>
>>>>> Carsten
>>>>>
>>>>>
>>>>>
>>>>> *From:* Guilherme Souza [mailto: <gso...@gm...>
>>>>> gso...@gm...]
>>>>> *Sent:* Friday, January 29, 2016 7:07 AM
>>>>> *To:* <pym...@li...>
>>>>> pym...@li...
>>>>> *Subject:* [PyMOL] ColorByRMSD script
>>>>>
>>>>>
>>>>>
>>>>> Hi.
>>>>>
>>>>>
>>>>>
>>>>> I'm a starter in PyMOL, and I'm trying to use this script, ColorByRMSD
>>>>> ( <http://www.pymolwiki.org/index.php/ColorByRMSD>
>>>>> http://www.pymolwiki.org/index.php/ColorByRMSD). However, I'm getting
>>>>> the following error message, when I initialize PyMOL after installing the
>>>>> plugin:
>>>>>
>>>>>
>>>>>
>>>>> Exception in plugin 'colorbyrmsd' -- Traceback follows...
>>>>>
>>>>> Traceback (most recent call last):
>>>>>
>>>>>   File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pmg_tk\PMGApp.py",
>>>>> line 313, in initializePlugins
>>>>>
>>>>>     __builtin__.__import__(mod_name)
>>>>>
>>>>> SyntaxError: future feature print_function is not defined
>>>>> (colorbyrmsd.py, line 10)
>>>>>
>>>>> Error: unable to initialize plugin 'colorbyrmsd'.
>>>>>
>>>>>
>>>>>
>>>>> I'm using Python 2.7, and I've already checked '__future__' module,
>>>>> and 'print_function' is there, so I don't know what could be causing this.
>>>>>
>>>>>
>>>>>
>>>>> I'd be glad if anyone could give me a help.
>>>>>
>>>>>
>>>>>
>>>>> Thank you.
>>>>>
>>>>
>>>>
>>>
>>
>>
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