Re: [PyMOL] scipy problem

[Thomas H. <tho...@sc...>]

Hi Tsjerk,

thanks for the report. This only affects MacPyMOL, or more specific the Python distribution that we bundle with it. We now also provide a MacPyMOL without the bundle, which uses the system Python and doesn't suffer from this problem. When downloading Incentive PyMOL, choose MacPyMOL-v1.7.x.x-syspython.dmg.

Cheers,
  Thomas

On 19 Feb 2015, at 11:40, Tsjerk Wassenaar <ts...@gm...> wrote:
> Hey :)
> 
> If I try to import scipy.linalg, Pymol quits abruptly. I could trace it to a problem with the importing fblas, but can't work out what's wrong there. I've checked my native implementation of Python 2.7 with SciPy, which works without problem. Here's the log:
> 
> 
>  PyMOL(TM) Incentive Product - PyMOL Executable Build
>  Copyright (C) Schrodinger, LLC
>  
>  This PyMOL Executable Build is available only to PyMOL Power, Casual, and 
>  Developer Users who have a valid license to use this software product. Any
>  other usage is specifically prohibited and may constitute a violation of 
>  United States and international copyright laws.
>  
>  This Executable Build integrates and extends Open-Source PyMOL 1.7.4.0.
>  Detected OpenGL version 2.0 or greater. Shaders available.
>  Detected GLSL version 1.20.
>  OpenGL graphics engine:
>   GL_VENDOR:   NVIDIA Corporation
>   GL_RENDERER: NVIDIA GeForce GT 750M OpenGL Engine
>   GL_VERSION:  2.1 NVIDIA-8.26.28 310.40.55b01
>  Detected 8 CPU cores.  Enabled multithreaded rendering.
> 2015-02-19 17:36:38.355 MacPyMOL[46379:507] HID: Apple Internal Keyboard / Trackpad
> 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Counted 1 buttons on this device.
> 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Tsjerk Wassenaar’s Mouse
> 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Counted 2 buttons on this device.
> 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Apple Internal Keyboard / Trackpad
> 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Counted 3 buttons on this device.
> 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Max number of buttons found: 3.
> PyMOL>import scipy.linalg.fblas
> Fatal Python error: PyThreadState_Get: no current thread
> Abort trap: 6
> 
> If you need more info, let me know.
> 
> Cheers,
> 
> Tsjerk
> 
> -- 
> Tsjerk A. Wassenaar, Ph.D.

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.