Re: [PyMOL] Aligning multiple residue sets in two or more proteins

[Monica M. <mon...@gm...>]

Thanks to all. It worked for me.
Thanks and Cheers!


On Wed, Jul 2, 2014 at 6:47 PM, Rajintha Bandaranayake <raj...@gm...>
wrote:

> Monica,
>
> Try:
>
> align PDB1//A/80-120+160-220/, PDB2//A/80-120+160-220/
> or if you want to align using the alpha carbons,
> align PDB1//A/80-120+160-220/CA, PDB2//A/80-120+160-220/CA
>
> Cheers,
> -Rajintha
>
> On Wed, Jul 2, 2014 at 7:22 AM, Monica Mittal <mon...@gm...>
> wrote:
>
>> Dear all
>> I need to align lets say resi 80-120 and 160-220 from one protein to resi
>> 80-120 and 160-220 in second protein. How can i do this.
>> I tried following:
>> align PDB1 and resi 80-120, PDB2 and resi 80-120
>> this is for one set but how to do for two sets 80-120 as well as 160-220
>> simultaneously.
>> Thank you
>> Monica
>>
>>
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>
>