From: Robert H. <ha...@st...> - 2014-02-11 01:43:12
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Riccardo, like me, I think you forgot to "reply all." (I gather that from your addressing two of us and not just me.) Yes, Jmol does that. It's not perfect, but it's a respectable amount of PyMOL functionality. This is actually something that Warren and I talked about not too long before his untimely death, and it took a trip last January for me to the Weizmann Institute to get my head around. See http://ispcsrv.weizmann.ac.il/a2jmolb/browse It's actually pretty fun to see PyMOL sessions appear in pure JavaScript! There will always be aspects of biomolecular visualization that only PyMOL can reproduce, and that I have no hope of implementing in Jmol, still it's a good challenge to try, and we feel it fills a need in the area of interactive web content, at least until Schrodinger comes out with their own web viewer, which I'm guessing is not far off... (Sorry, that was a looong sentence!) I haven't explored JyMOL, but I guess it has the potential to do that, and like Jmol could probably be converted to JavaScript. I don't know. But I'm guessing it uses WebGL which isn't an adequate solution in my opinion. Thomas...? Bob Hanson On Mon, Feb 10, 2014 at 6:49 PM, Riccardo <mi...@gm...> wrote: > @Jared: Hello! Thanks for you reply! I supposed it... So, must be > implemented yet; is that the only interested file for that exporting > function? Thanks a lot. > > @Bob: Hello! Nice to hear you here! Thanks. > Yes. So JmolData.jar can read a .pse file as is (with lights, > transparences, hidden no-polar hydrogens, colors, ray, etc)? Sounds good. > > Thanks a lot to you. > > Regards, > Riccardo Volpe > > > *ChemBioScripting | X3D PyMOL Molecule Viewer > <http://chembioscripting.hol.es> *|* Gioacchino Riccardo Volpe* > > > 2014-02-10 23:25 GMT+01:00 Robert Hanson <ha...@st...>: > > So in the mean time, Riccardo, I guess what you are already using: >> >> xxx.pse -- JmolData.jar --> idtf >> >> is your best bet. >> >> Q: What sort of size of PDF file are you seeing in the end? >> Q: Do you see this a practical and useful in some way? If so, in what >> way? >> >> Bob Hanson >> >> >> >> > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |