From: sunyeping <sun...@al...> - 2013-12-10 06:04:25
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Hi, professor Holder,Thank you for the reply, but how can I do this on the level of individual amino acids in stead of atom? I have two homolog stuctures and I want to map the difference between the b factors of the corresonding residues of these two stuctures rather than individual atoms. And I want to use gradually deepened color from white to blue. Could you explain more in detail? Thanks. Yeping Sun Institute of Microbiology, Chinese Academy of Sciences ------------------------------------------------------------------ 发件人:Thomas Holder <sp...@us...> 发送时间:2013年12月10日(星期二) 04:50 收件人:孙业平 <sun...@al...> 抄 送:pymol-users <pym...@li...> 主 题:Re: [PyMOL] gradually changed colors with flexibility Hi Yeping, use the spectrum command: PyMOL> spectrum b, blue_white_red http://pymolwiki.org/index.php/Spectrum Cheers, Thomas On 09 Dec 2013, at 11:30, sunyeping <sun...@al...> wrote: > Dear all, > > I want to show amino acids in a structure according to their flexibility (B factor) by gradually changed colors. Can pymol do this? Thanks. > > Yeping Sun > > Institute of Microbiology, Chinese Academy of Sciences ------------------------------------------------------------------------------ Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyM...@li...) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pym...@li... |