Re: [PyMOL] what is an object colored ?

[Jason V. <jas...@sc...>]

Jon,

You can also iterate over a selection and show the color index for each
color

iterate *, color

You can then color by those indices, eg:

color 26

Cheers,

-- Jason


On Mon, Nov 25, 2013 at 5:42 AM, Jonathan Grimes
<jon...@st...>wrote:

>
>  dear all,
>
>   i am having implementing these instructions.
>
>   i would like to work out what color an object is……
>
>   how is this defined …..
>
> > s["names"][1][5][0][1]
> >
> > equals your object name.
>
>   if I have an object called A1…i am unsure how to
>    make A1 equal to s["names"][1][5][0][1]
>
>
>   many thanks
>
>   jon
>
>
> Dr. Jonathan M. Grimes,
> NDM Senior Reseach Fellow
> University Research Lecturer
> DIAMOND Research Fellow
>
> Division of Structural Biology
> Wellcome Trust Centre for Human Genetics
> University of Oxford
> Roosevelt Drive,
> Oxford OX3 7BN, UK
>
> Email: Jon...@st..., Web: www.strubi.ox.ac.uk
> Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547
>
> On 12 Dec 2012, at 17:24, Jason Vertrees <jas...@sc...>
> wrote:
>
> > Hi Jon,
> >
> >> ive been given a pse file.....and i am trying to work out what color
> >>   an object is......
> >>
> >>   i used the command
> >>
> >> get cartoon_color, pT_A
> >>
> >>  and got back....
> >>
> >> get: cartoon_color = default in object pT_A
> >
> > You're right, that's not very helpful. This will get you the answer,
> > but it's not very straightforward:
> >
> > s = cmd.get_session()
> >
> > print cmd.get_color_tuple(s["names"][1][5][0][2])
> >
> > To make sure you have right object ensure that,
> >
> > s["names"][1][5][0][1]
> >
> > equals your object name.
> >
> > Cheers,
> >
> > -- Jason
> >
> > --
> > Jason Vertrees, PhD
> > Director of Core Modeling Product Management
> > Schrödinger, Inc.
> >
> > (e) Jas...@sc...
> > (o) +1 (603) 374-7120
>
>


-- 
Jason Vertrees, PhD
Director of Core Modeling Products
Schrödinger, Inc.

(e) Jas...@sc...
(o) +1 (603) 374-7120