Re: [PyMOL] residue B factor

[Sampson, J. <Jar...@ny...>]

Hi Yeping -

There is a script on the PyMOL Wiki that will help with this.  http://pymolwiki.org/index.php/Average_b

Save the code in a plain text file as average_b.py in your working directory, then run it from the PyMOL prompt:

run average_b.py

Then you can analyze any residue you like, for example:

fetch 1shv
average_b (chain A and resi 70)

For a more rigorous analysis, you also may want to look at the CCP4 program Baverage<http://www.ccp4.ac.uk/html/baverage.html>.

Cheers,
Jared

--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
Medical Science Building, Room 398
550 First Avenue
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/





On Nov 5, 2013, at 7:49 PM, sunyeping <sun...@al...<mailto:sun...@al...>> wrote:

Dear pymol users,
Pdb files give B factor of each atom. How can I get B factor of the individual residues? Thanks.



Yeping Sun

Institute of Microbiology, Chinese Academy of Sciences

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