Re: [PyMOL] Sequence numbers in MacPyMOL 1.6.0.0 with background set to white

[Oganesyan, V. <Oga...@Me...>]

Engin,

If you go to Edit_all and change the seq_view_label_color to grey the numbers will become visible with white bkgr.

     Vaheh




-----Original Message-----
From: Engin Özkan [mailto:eo...@st...]
Sent: Wednesday, September 04, 2013 4:40 PM
To: pym...@li...
Subject: Re: [PyMOL] Sequence numbers in MacPyMOL 1.6.0.0 with background set to white

I forgot to explicitly say, this is only for the Sequence View panel, which has a black background regardless of the background parameter. And it applies to both sequence numbers and chain labels. Sequences themselves are displayed correctly.

Engin

On 9/4/13 12:59 PM, Engin Özkan wrote:
> Hi everybody,
>
> Using MacPyMOL 1.6.0.0 Incentive Build, I no longer can see residue
> numbers in the sequence if the background is set to white. I have been
> playing with all the seq_view_* settings (thanks for documenting them
> clearly within the Edit All Settings window!), especially
> seq_view_label_color, and this setting works if the background is not
> set to white. If the background is white (regardless of opaque
> background or not), many colors I tried display no font (or likely
> black font), *but* some colors do, and some colors display incorrect colors.
>
> RGB/CMYK colors (black, red, green, blue, yellow, cyan, magenta) and
> white for sequence numbers do not show. Grey, purple and brown look
> fine, but pink is a dimmed light blue, orange is green, and aquamarine
> is brown. After having too much fun with these colors, I thought I
> report this.
>
> Same on PyMOLX11Hybrid, and fink-built 1.6.0.0, but fink-built version
> catches an error as it is starting, which may be related:
> libpng warning: iCCP: known incorrect sRGB profile
>
> Working on a Mac 10.6.8.
>
> Best,
> Engin
>
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