Re: [PyMOL] python module in pymol

[Jérôme P. <j.p...@pa...>]

Dear Pascal,

Do you have any errors/warning when launching PyMOL?

If you fetch a structure in your PML file, be sure that the structure is
downloaded before to start the plugin (use: fetch pdb_code, async=0)

Can you send me some part of your PML file, so I can help you to debug?

Best regards,

Jerome Pansanel



Le mardi 09 juillet 2013 à 13:06 +0200, Pascal Auffinger a écrit :
> Hi,
> 
> 
> I tried to use the "cluster_count" script
> (http://www.pymolwiki.org/index.php/Cluster_Count)
> in a pymol.pml file. Unfortunately I get the following message:
> ---
> PyMOL>cluster_count PO4
> Traceback (most recent call last):
>   File "/home/sws2/Desktop/pymol/modules/pymol/parser.py", line 464,
> in parse
>     exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
>   File "<string>", line 1
>     cluster_count PO4
>                                ^
> SyntaxError: invalid syntax
> ---
> (PO4) is a selection of five atoms
> 
> 
> When I use the same script as a pymol plugin, it works fine
> when I type in the command "cluster_count PO4"
> 
> 
> Any idea ???
> 
> 
> Thanks for helping,
> 
> 
> Pascal
> 
> 
> 
> 
> 
> -----
> Pascal Auffinger
> IBMC/CNRS
> 15 rue René Descartes
> 67084 Strasbourg Cedex
> 
> 
> p.a...@ib...
> -----
> 
> 
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