Re: [PyMOL] Trouble with mutagenesis script

[Jason V. <jas...@sc...>]

Hi Dan,

You're missing a slash. You have:

PyMOL.exe -qc mutate.py -- digly.pdb digly A/2 ASN


where you should have

PyMOL.exe -qc mutate.py -- digly.pdb digly A/2/ ASN

When the residue is properly selected you'll see this:

Selected!
 Mutagenesis: 4 rotamers loaded.
 ExecutiveRMS: RMS =    0.083 (4 to 4 atoms)
 Mutagenesis: 12 rotamers loaded.

where the RMS will change based on your residues.

Cheers,

-- Jason

-- 
Jason Vertrees, PhD
Director of Core Modeling Products
Schrödinger, Inc.

(e) Jas...@sc...
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