Re: [PyMOL] Pymol error

[Rhitankar P. <rhi...@gm...>]

Hi David,

I installed tcl without the corefoundation and now while trying to install
pymol I am getting the following error message:

Error: org.macports.archivefetch for port pymol returned: tk must be
installed without +quartz.

How can I install tk without +quartz? Are these issues happening because
OSX 10.8.2 comes with preinstalled tcl and tk ?

Thanks
Rhitankar





On Tue, May 7, 2013 at 12:30 PM, David Hall <li...@co...> wrote:

> by default, macports installs tcl with the +corefoundation variant (see
> http://guide.macports.org/#using.variants )
>
> if you do:
>
> sudo port install tcl -corefoundation
>
> that will solve the problem.
>
> -David
>
>
>
>
> On Mon, May 6, 2013 at 8:26 PM, Rhitankar Pal <rhi...@gm...> wrote:
>
>> Dear Thomas,
>>
>> One more question. When I tried to install pymol using port [ sudo port
>> install pymol ] I get the following error message:
>>
>> Error: org.macports.archivefetch for port pymol returned: tcl must be
>> installed without +corefoundation.
>>
>> Do you have any idea why there is this error message?
>>
>> Eventually I downloaded the tar.gz and installed it using the setup.py
>> inside. Which is apparently not compatible with the Pmw2 and therefore gave
>> the error I mentioned in my previous email. Any help would be appreciated
>>
>> Thanks
>> Rhitankar
>>
>>
>>
>>
>>
>> On Mon, May 6, 2013 at 8:20 PM, Rhitankar Pal <rhi...@gm...>wrote:
>>
>>> Dear Thomas,
>>>
>>> Now I have installed Pmw.1.3 which should be the one compatible with
>>> python2.7 I guess. However I am still getting the same error. I think pymol
>>> is trying to use Pmw2 by default. Is there any way we can ask it to use 1.3
>>> instead?
>>>
>>> Thanks for your help
>>>
>>> Rhitankar
>>>
>>>
>>>
>>> On Sat, May 4, 2013 at 6:21 AM, Thomas Holder <
>>> tho...@sc...> wrote:
>>>
>>>> Hi Rhitankar,
>>>>
>>>> looks like you installed the python3 version of Pmw which is not
>>>> compatible with python 2.7.
>>>>
>>>> Cheers,
>>>>   Thomas
>>>>
>>>> Rhitankar Pal wrote, On 05/03/13 21:16:
>>>> > Dear Pymol developers,
>>>> >
>>>> > I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and have the
>>>> > following error while opening the GUI
>>>> >
>>>> > Traceback (most recent call last):
>>>> >   File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", line
>>>> 35,
>>>> > in run
>>>> >     PMGApp(pymol_instance,skin).run(poll)
>>>> >   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 325,
>>>> > in __init__
>>>> >     self.runSkin()
>>>> >   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 251,
>>>> > in runSkin
>>>> >     self.skin.setup()
>>>> >   File
>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>>>> > line 3661, in setup
>>>> >     self.createInterface()
>>>> >   File
>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>>>> > line 3634, in createInterface
>>>> >     self.balloon = Pmw.Balloon(self.root)
>>>> >   File
>>>> > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py",
>>>> > line 28, in __init__
>>>> >     Pmw.MegaToplevel.__init__(self, parent)
>>>> >   File
>>>> "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py",
>>>> > line 982, in __init__
>>>> >     super().__init__(parent, tkinter.Toplevel)
>>>> > TypeError: super() takes at least 1 argument (0 given)
>>>> >
>>>> > As a result it never opens the "The Pymol Molecular Graphics System"
>>>> > window. Can anyone help to find out what might be wrong.
>>>> >
>>>> > Thanks
>>>> > Rhitankar
>>>> >
>>>> > --
>>>> > Rhitankar Pal
>>>> > Postdoctoral Researcher,
>>>> > Dept of Chemistry, Yale University
>>>> > New Haven, CT 06511
>>>>
>>>> --
>>>> Thomas Holder
>>>> PyMOL Developer
>>>> Schrödinger Contractor
>>>>
>>>>
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>>>>
>>>
>>>
>>>
>>> --
>>> Rhitankar Pal
>>> Postdoctoral Researcher,
>>> Dept of Chemistry, Yale University
>>> New Haven, CT 06511
>>>
>>
>>
>>
>> --
>> Rhitankar Pal
>> Postdoctoral Researcher,
>> Dept of Chemistry, Yale University
>> New Haven, CT 06511
>>
>>
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>
>


-- 
Rhitankar Pal
Postdoctoral Researcher,
Dept of Chemistry, Yale University
New Haven, CT 06511