Re: [PyMOL] Pymol error

[Rhitankar P. <rhi...@gm...>]

Dear Thomas,

One more question. When I tried to install pymol using port [ sudo port
install pymol ] I get the following error message:

Error: org.macports.archivefetch for port pymol returned: tcl must be
installed without +corefoundation.

Do you have any idea why there is this error message?

Eventually I downloaded the tar.gz and installed it using the setup.py
inside. Which is apparently not compatible with the Pmw2 and therefore gave
the error I mentioned in my previous email. Any help would be appreciated

Thanks
Rhitankar





On Mon, May 6, 2013 at 8:20 PM, Rhitankar Pal <rhi...@gm...> wrote:

> Dear Thomas,
>
> Now I have installed Pmw.1.3 which should be the one compatible with
> python2.7 I guess. However I am still getting the same error. I think pymol
> is trying to use Pmw2 by default. Is there any way we can ask it to use 1.3
> instead?
>
> Thanks for your help
>
> Rhitankar
>
>
>
> On Sat, May 4, 2013 at 6:21 AM, Thomas Holder <
> tho...@sc...> wrote:
>
>> Hi Rhitankar,
>>
>> looks like you installed the python3 version of Pmw which is not
>> compatible with python 2.7.
>>
>> Cheers,
>>   Thomas
>>
>> Rhitankar Pal wrote, On 05/03/13 21:16:
>> > Dear Pymol developers,
>> >
>> > I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and have the
>> > following error while opening the GUI
>> >
>> > Traceback (most recent call last):
>> >   File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", line 35,
>> > in run
>> >     PMGApp(pymol_instance,skin).run(poll)
>> >   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 325,
>> > in __init__
>> >     self.runSkin()
>> >   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 251,
>> > in runSkin
>> >     self.skin.setup()
>> >   File
>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>> > line 3661, in setup
>> >     self.createInterface()
>> >   File
>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>> > line 3634, in createInterface
>> >     self.balloon = Pmw.Balloon(self.root)
>> >   File
>> > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py",
>> > line 28, in __init__
>> >     Pmw.MegaToplevel.__init__(self, parent)
>> >   File "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py",
>> > line 982, in __init__
>> >     super().__init__(parent, tkinter.Toplevel)
>> > TypeError: super() takes at least 1 argument (0 given)
>> >
>> > As a result it never opens the "The Pymol Molecular Graphics System"
>> > window. Can anyone help to find out what might be wrong.
>> >
>> > Thanks
>> > Rhitankar
>> >
>> > --
>> > Rhitankar Pal
>> > Postdoctoral Researcher,
>> > Dept of Chemistry, Yale University
>> > New Haven, CT 06511
>>
>> --
>> Thomas Holder
>> PyMOL Developer
>> Schrödinger Contractor
>>
>>
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>
>
>
> --
> Rhitankar Pal
> Postdoctoral Researcher,
> Dept of Chemistry, Yale University
> New Haven, CT 06511
>



-- 
Rhitankar Pal
Postdoctoral Researcher,
Dept of Chemistry, Yale University
New Haven, CT 06511