Re: [PyMOL] PyMOL script with a parameter ?

[Matthew B. <mp...@pi...>]

Hi Tim,

You can use two dashes on the command line, like:
pymol -r get_neighbors.py -- ALA

And then access them using sys.argv in your script.

For example: save the following as tmp_pymol.py and run: 'pymol -r 
tmp_pymol.py -- ALA' ( without quotes)

 >>>>
from pymol import cmd
import sys


def foo(string):
         print string
         return

cmd.extend('foo',foo)


if __name__ == '__main__':
         foo(sys.argv[1])

 >>>
Hope this helps,
Matt

On 02/22/2013 10:50 AM, Someone Else wrote:
> Hi everyone,
>
> I would like my PyMOL script take a command line parameters, e.g:
>
> pymol get_neighbors.py ALA
>
> How to extract "ALA" from inside my neighbors.py?
>
> Best regards,
> Tim
>
>
>
>
> ------------------------------------------------------------------------------
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_feb
>
>
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...